PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21169A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 234aa    MW: 25968.8 Da    PI: 9.8385
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21169AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like20.31.3e-061163651
                    G2-like 36 mkvkgLtlehvkSHLQ 51
                               m+v gLt++hvkSHLQ
  Oropetium_20150105_21169A  1 MDVTGLTIAHVKSHLQ 16
                               9*************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-5116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDVTGLTIAH VKSHLQVLVQ FLQPLPLLKP MQPRLVHPMH SFIVDEEGPR EFMCPPMKRA  60
KVLGAEAAAA HESMLQQNSN MGAAGTQHRS DDCMQATFIG RRMNQGLAWH RNSASLKALG  120
FWVRGSEPFK VQQISKSMAN HISGPVVRQL SSKEVNFENS RFLFSIRDEQ AERRSPLQLL  180
DPRAVEDTTS WPSERSCVLS PPRSSTSFSG CSVPSGSCLA GQRQWPIGLN FKY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21169A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799208.13e-63uncharacterized protein LOC112879085
TrEMBLA0A0A9FRQ91e-69A0A0A9FRQ9_ARUDO; Uncharacterized protein
STRINGPavir.Ab02674.1.p3e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583