PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21405A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 335aa    MW: 35846.2 Da    PI: 8.4601
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21405AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-11105129327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++ C++++rtG C++G +CkF+H+p
  Oropetium_20150105_21405A 105 EPDCSYYMRTGLCRFGMTCKFNHPP 129
                                789********************97 PP
2zf-CCCH406.4e-13149174227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++C+++++tGtCk+G++CkF+H++
  Oropetium_20150105_21405A 149 GQPECQYYLKTGTCKFGATCKFHHPR 174
                                689*********************96 PP
3zf-CCCH23.59.6e-08249266219
                                -S---SGGGGTS--TTTT CS
                    zf-CCCH   2 ktelCrffartGtCkyGd 19 
                                ++++C+f+++tG Ck+G+
  Oropetium_20150105_21405A 249 DQPECQFYMKTGDCKFGA 266
                                689**************7 PP
4zf-CCCH37.73.4e-12268292327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                +++C f++r+G+Ck+G++CkF H++
  Oropetium_20150105_21405A 268 EPICTFYSRYGICKFGPNCKFDHPM 292
                                799********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.676102130IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4102129IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-9105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5107130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4108128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77147175IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6147174IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10149174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6151176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5153175IPR000571Zinc finger, CCCH-type
SMARTSM0035617247268IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.348247264IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-5249266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295265293IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9268292IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011269292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4270290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5270294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAAPSAGAGG VGVGGVGEGS SSSAAAAAAA TIGSYGVHEA AMKATPLITR SRSRGPGESS  60
FSAAQVALTV AAAVIGPHKV DEEAMWQMNL GEAAESGPYP ERAGEPDCSY YMRTGLCRFG  120
MTCKFNHPPD RKLAVAAARM KGEYPQRSGQ PECQYYLKTG TCKFGATCKF HHPREKAAIA  180
NRVQWNSLGY PLRPVPGWNP YAQRTPGGGQ YYTGSRRSET PGMGDQGMFS VPVGLYAVPR  240
ENVFPERPDQ PECQFYMKTG DCKFGAGEPI CTFYSRYGIC KFGPNCKFDH PMGQVIYDHA  300
SSPTSEVPTA RRRISHSDSQ QTPPGERSTE REAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21405A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0951931e-94FP095193.1 Phyllostachys edulis cDNA clone: bphylf048f08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617449.11e-124zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J41e-125C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0D9Z6U41e-148A0A0D9Z6U4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0J1T91e-148A0A0E0J1T9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0R8971e-148A0A0E0R897_ORYRU; Uncharacterized protein
STRINGOPUNC11G11150.11e-124(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.21e-86zinc finger nuclease 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]