PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21467A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 217aa    MW: 23888.6 Da    PI: 8.7706
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21467AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.85.7e-4272149178
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                +C v+gC++dls++++yhrrhkvCe+hsk+pvv+v g+eqrfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q+
  Oropetium_20150105_21467A  72 TCSVDGCRSDLSRCRDYHRRHKVCEAHSKTPVVVVGGQEQRFCQQCSRFHMLSEFDEGKRSCRKRLDGHNRRRRKPQH 149
                                6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-3469134IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.41170147IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-4072152IPR004333Transcription factor, SBP-box
PfamPF031102.5E-3173146IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDWAGGASSW VAAADQGPTM VSFAGQDSST CPTAEIELQD FSFSVGRRAR PAGASSGSGR  60
RSRTAGVGGP ETCSVDGCRS DLSRCRDYHR RHKVCEAHSK TPVVVVGGQE QRFCQQCSRF  120
HMLSEFDEGK RSCRKRLDGH NRRRRKPQHD VMNLGGFFPY HQETFRTPKQ FPFSQEGGSM  180
LNVFRPNNLL AEHGSLIGSS TLSGPLDPDL LQQVYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2964146284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129146KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21467A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450775.11e-84putative squamosa promoter-binding-like protein 19 isoform X1
RefseqXP_021317606.11e-84putative squamosa promoter-binding-like protein 19 isoform X1
RefseqXP_021317607.11e-84putative squamosa promoter-binding-like protein 19 isoform X1
SwissprotQ2R3Y18e-58SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLC5Y2L52e-83C5Y2L5_SORBI; Uncharacterized protein
STRINGSb05g017510.14e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-41SBP family protein