PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21595A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

WOX

Protein Properties

Length: 253aa MW: 28142.4 Da PI: 5.1706

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21595A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.4	6.6e-20	92	152	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t ql++Le+ F + n +p +++++e++++l +++e++V++WFqNrRa+ k+ Oropetium_20150105_21595A 92 RQRWQPTLMQLQILESIFDQgNGTPCKQKIKEITEELshhgQISETNVYNWFQNRRARSKR 152 89***************99************************************97 PP
2	Wus_type_Homeobox	98.1	7e-32	91	154	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Pt Q++iLe+++++G tP k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Oropetium_20150105_21595A 91 ARQRWQPTLMQLQILESIFDQGNGTPCKQKIKEITEELSHHGQISETNVYNWFQNRRARSKRKQ 154 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-16	87	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.252	88	153	IPR001356	Homeobox domain
SMART	SM00389	9.9E-13	90	157	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-16	91	155	IPR009057	Homeodomain-like
CDD	cd00086	3.05E-13	92	154	No hit	No description
Pfam	PF00046	1.1E-17	92	152	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEWGDRGNAY AAAAEEEAGG GEPLGFVKVM TDEQVDVLRK QISVYAAICE QLVEMHRALT 60 EHQDSVSGMG FSNLNLYCDP LIVPGGHKIT ARQRWQPTLM QLQILESIFD QGNGTPCKQK 120 IKEITEELSH HGQISETNVY NWFQNRRARS KRKQAASLPN NAESEAEADD EFLSDKKPKS 180 DGPLQQSKVT SVHNAGRILE MHHLEAEQNQ MGGTIFGSND NSLRLSGTSA RMPYESILSN 240 PSTFPDYYFI PQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	153	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21595A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456540.1	1e-122	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-93	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1E5V6G7	1e-123	A0A1E5V6G7_9POAL; WUSCHEL-related homeobox 8
STRING	Sb03g038080.1	1e-121	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-53	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21595A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]