PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21867A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 152aa    MW: 16837.9 Da    PI: 8.5323
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21867AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1491.3e-152584463
                               XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                               ++re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + + ++  +  + +++++e+
  Oropetium_20150105_21867A 25 RRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQAENARVAARATDIAAQFQRVDQEN 84
                               68***********************************************99999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.5E-162286IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.5E-112279No hitNo description
PROSITE profilePS5021711.1162487IPR004827Basic-leucine zipper domain
PfamPF001701.8E-112584IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.81E-102677No hitNo description
CDDcd147027.26E-162778No hitNo description
PROSITE patternPS0003602944IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006971Biological Processhypotonic response
GO:0009267Biological Processcellular response to starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSSSSQLSPG GRLSGSDGDS ALDTRRREKR RLSNRESARR SRLRKQQHLD ELVQEVARLQ  60
AENARVAARA TDIAAQFQRV DQENTVLRAR AAELGDRLRS VNEVLRVVEE FSGVAMDIQE  120
EMPADDPLLR PWQLPCPAAA AMPIGGAMFH Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12431RRREKRRL
23844RRSRLRK
33845RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtMay contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00419DAPTransfer from AT3G62420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21867A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342891e-135BT034289.1 Zea mays full-length cDNA clone ZM_BFc0009B07 mRNA, complete cds.
GenBankBT0884081e-135BT088408.1 Zea mays full-length cDNA clone ZM_BFc0179N23 mRNA, complete cds.
GenBankEU9647361e-135EU964736.1 Zea mays clone 281235 ocs element-binding factor 1 mRNA, complete cds.
GenBankX627451e-135X62745.1 Z.mays OBF1 mRNA for ocs-element binding factor 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808697.13e-87ocs element-binding factor 1
SwissprotP240684e-85OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLA0A2T7EHZ04e-86A0A2T7EHZ0_9POAL; Uncharacterized protein
TrEMBLA0A3L6R9764e-86A0A3L6R976_PANMI; Ocs element-binding factor 1
STRINGPavir.Cb00560.1.p2e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.11e-23basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Singh K, et al.
    OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development.
    Plant Cell, 1990. 2(9): p. 891-903
    [PMID:2152133]