PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_22194A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 149aa MW: 16169.2 Da PI: 6.6161

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_22194A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	57.1	5.3e-18	2	53	49	100
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql+ +lal+k+e Oropetium_20150105_22194A 2 LPVHQRADAVSSLVYEANARLRDPVYGCVGAISYLQQQVSQLQMQLALAKAE 53 6889********************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.402	1	54	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-16	2	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
ELPVHQRADA VSSLVYEANA RLRDPVYGCV GAISYLQQQV SQLQMQLALA KAEILCVQMQ 60 QHDDGGQNNY GHYSTAAAPS SKQQQVQQHM DGETFCHSLI TMQNGLTNAL INSPSAHHQQ 120 QLLSSLGSSG STAMMLREAC LKKESLWA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-18	1	55	58	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-18	1	55	58	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_22194A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100852	2e-51	FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978582.1	2e-48	LOB domain-containing protein 12
TrEMBL	K3ZJV9	5e-47	K3ZJV9_SETIT; Uncharacterized protein
STRING	Si026864m	9e-48	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-23	LBD family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_22194A