PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22201A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 249aa    MW: 27197.7 Da    PI: 7.1077
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22201AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like21.93.9e-076888223
                    G2-like  2 prlrWtpeLHerFveaveqLGG 23
                               prlrWtpeLH +F++a+++  G
  Oropetium_20150105_22201A 68 PRLRWTPELHLCFLRALQEG-G 88
                               9****************984.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-66488IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEESNRGFAS SKDQLAPGNG KEAAAAVDDA PHGSSSNSST VDIDGGDSSR SRKTSSSSVR  60
PYVRSKNPRL RWTPELHLCF LRALQEGGQV YNLGHLSLHH AQTGSGTILS ARFGAWPYWN  120
NSHESYRLHC GHGIESKHYY YSTTADAFLI ARAPYVARHT CTPTTTIPQE YSSSQNDQIM  180
NGHGRQTLKK DDDDDDPLDL KLALNIGPQR WDKRKRSGFS CDKQGDDNGG DQVESNATGP  240
LSLSLFPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22201A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321607.19e-50uncharacterized protein LOC8064764
TrEMBLA0A1E5VA202e-55A0A1E5VA20_9POAL; Uncharacterized protein
STRINGSb05g000480.12e-54(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-09G2-like family protein