PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_22283A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Trihelix

Protein Properties

Length: 462aa MW: 50047.5 Da PI: 7.4883

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_22283A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.3	4.7e-19	93	159	21	86
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 ++++kk++W++vs++m++ gf +sp+qC++k+++lnkryk++ + +++ +++++++++++d ++ Oropetium_20150105_22283A 93 AAQQQQKKGKWKSVSRAMMDNGFLVSPQQCEDKFNDLNKRYKRVVDLLGRGrACRVVENHALLDTID 159 45678*****************************************99967*****9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.1E-15	96	185	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MAITTVVTAA TSHDDEIAGN GCVGKGVAVQ QXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 60 XXXXDDGEGV PAAAAGKAGH GKSGSSHGHG HAAAQQQQKK GKWKSVSRAM MDNGFLVSPQ 120 QCEDKFNDLN KRYKRVVDLL GRGRACRVVE NHALLDTIDE LTPKAKDEAR KLLNSKHLFF 180 REMCAYHNSG AAHAAAPPVP PHATASDAAA CLHHPPPAPI AAASSAAARH GHMAPSPPGT 240 KDSSADAADP DDDSEDGVSX XXXXXXXXXX XXXXGHMYPN QRLHHHHNSN HRGGGSGGRV 300 KRGRGTDDSA AGEDIFEDDD AVGKRGRTAA GEQSAAVQQL QSELASATAA ADPHAARGWV 360 RRRAVEVEEQ QVATEWRAHQ LERQRLKWER FRANKERDME RARLHNDRLR LDGQRMLLML 420 RQRDLELDMV EANSSSVDHH NGQGPLAIHL GSSPSTTGHP N*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MAITTVVTAA TSHDDEIAGN GCVGKGVAVQ QXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXDDGEGV PAAAAGKAGH GKSGSSHGHG HAAAQQQQKK GKWKSVSRAM MDNGFLVSPQ  120
QCEDKFNDLN KRYKRVVDLL GRGRACRVVE NHALLDTIDE LTPKAKDEAR KLLNSKHLFF  180
REMCAYHNSG AAHAAAPPVP PHATASDAAA CLHHPPPAPI AAASSAAARH GHMAPSPPGT  240
KDSSADAADP DDDSEDGVSX XXXXXXXXXX XXXXGHMYPN QRLHHHHNSN HRGGGSGGRV  300
KRGRGTDDSA AGEDIFEDDD AVGKRGRTAA GEQSAAVQQL QSELASATAA ADPHAARGWV  360
RRRAVEVEEQ QVATEWRAHQ LERQRLKWER FRANKERDME RARLHNDRLR LDGQRMLLML  420
RQRDLELDMV EANSSSVDHH NGQGPLAIHL GSSPSTTGHP N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_22283A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK289028	1e-95	AK289028.1 Oryza sativa Japonica Group cDNA, clone: J090090M16, full insert sequence.
GenBank	AP003414	1e-95	AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBank	AP003921	1e-95	AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBank	AP014957	1e-95	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008655870.1	1e-133	uncharacterized protein LOC103635104
TrEMBL	A0A1D6FI02	1e-132	A0A1D6FI02_MAIZE; Sequence-specific DNA binding transcription factor
STRING	GRMZM2G305362_P01	1e-132	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11944	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-41	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_22283A