PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_22317A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

M-type_MADS

Protein Properties

Length: 408aa MW: 43932.4 Da PI: 6.0622

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_22317A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	25.1	2.3e-08	13	38	16	41
HHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 16 RrngilKKAeELSvLCdaevaviifs 41 R +++ KKAeELSvLC ++v ++ + Oropetium_20150105_22317A 13 RTATLKKKAEELSVLCRVRVGLVCAD 38 8899****************999765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00319	5.4E-7	13	41	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-8	13	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MAGKDLAAIR RSRTATLKKK AEELSVLCRV RVGLVCADGD GSATPEVWES VPGVLDAYRA 60 VRAEVRAAHA HRAHAEAELG KAEAKLARVR QAGPHALSLW DKAIDDMDAE EVERLLAAID 120 AKLVAVEDRR RALDMPVGHG HGHGGGGGLL EGLXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXE DALWANGMEM QLHYGVQQSP GAGGGADMNG YQLQSMAVGM NGYGDTSHAW 240 DASQSQPRGA DPTYHGYAPA FGGMSGYHNG TQSNPHNGGL LQPNLQHNAV TPAGYDHSHD 300 IGHGYFATPA AHIAQESYYG SSSFINAPPP ALSHPMGTGD NFTNPEPAQP LAAYYGGDLX 360 XXXXXXXXXX XXXXXXXXXX XXXXXGIEQL HYFSDVEDGL RLHLRGN*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MAGKDLAAIR RSRTATLKKK AEELSVLCRV RVGLVCADGD GSATPEVWES VPGVLDAYRA  60
VRAEVRAAHA HRAHAEAELG KAEAKLARVR QAGPHALSLW DKAIDDMDAE EVERLLAAID  120
AKLVAVEDRR RALDMPVGHG HGHGGGGGLL EGLXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXE DALWANGMEM QLHYGVQQSP GAGGGADMNG YQLQSMAVGM NGYGDTSHAW  240
DASQSQPRGA DPTYHGYAPA FGGMSGYHNG TQSNPHNGGL LQPNLQHNAV TPAGYDHSHD  300
IGHGYFATPA AHIAQESYYG SSSFINAPPP ALSHPMGTGD NFTNPEPAQP LAAYYGGDLX  360
XXXXXXXXXX XXXXXXXXXX XXXXXGIEQL HYFSDVEDGL RLHLRGN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_22317A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4572	29	60

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_22317A