PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22456A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 100aa    MW: 11501 Da    PI: 9.6114
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22456AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.41.9e-0820921077
                        NAM 10 tdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknra 77
                               +d el+ +yL++ v + +  ++e+ ++ +d+y+ +P++L +      ++++++ wy  ++ +     g+r  r+
  Oropetium_20150105_22456A 20 SDPELIERYLRPWVVSGTePPAESLVHVADVYSEHPEELTRryapaVARNGDRAWYCLCRLKY-IGVGTRFVRT 92
                               699*********97766636666668888**********844666555668889999887654.3457777774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.5571199IPR003441NAC domain
SuperFamilySSF1019413.92E-92091IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MPRRTCRAWR RTSNPSPPTS DPELIERYLR PWVVSGTEPP AESLVHVADV YSEHPEELTR  60
RYAPAVARNG DRAWYCLCRL KYIGVGTRFV RTVNTRDGW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22456A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3ES843e-16A0A0D3ES84_9ORYZ; Uncharacterized protein
STRINGOBART01G25780.16e-17(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2744533