PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22457A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 256aa    MW: 28380 Da    PI: 9.5206
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22457AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.11.1e-16201646128
                        NAM   6 rFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya....tgkrknrat 78 
                                + hP d el++ yL++ v++++   ++ ++i+  ++y+ +P++L +      ++++e+ wyf s+ ++k++     g r  r++
  Oropetium_20150105_22457A  20 ERHPCDLELIQAYLRPWVNSRRtaPPAVSCIHAENVYSEDPEKLTRryapaVARNGEHAWYFLSRLRTKANgicdFGARFARTV 103
                                559****************99976566678**************8446675555677899999998888776655588****88 PP

                        NAM  79 k..sgyWkatgkdkevlsk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                                +   g+Wk    + ++++    ++++ g +++L +       +g ++ g+ t W+m+e rl
  Oropetium_20150105_22457A 104 EngLGRWKIRPGQMAIVDVfddHRRQFGRRRSLHLMyekveeRGGKRVGTWTGWIMEELRL 164
                                823466**887777777766669999*******98778887778889999********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.09815186IPR003441NAC domain
PfamPF023651.3E-818164IPR003441NAC domain
SuperFamilySSF1019417.98E-2119186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MASGDDDNDA KSPPRAVDFE RHPCDLELIQ AYLRPWVNSR RTAPPAVSCI HAENVYSEDP  60
EKLTRRYAPA VARNGEHAWY FLSRLRTKAN GICDFGARFA RTVENGLGRW KIRPGQMAIV  120
DVFDDHRRQF GRRRSLHLMY EKVEERGGKR VGTWTGWIME ELRLGIELGR SGRDVDLCAL  180
CKVYRSSHHP ARPSDGAPAV EAVVAGPEEG DGSSANTASE TQELGAGMIP LAAAFGRLRA  240
RGGRRGQRRQ VCRAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22457A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-13NAC domain containing protein 47