PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22474A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 185aa    MW: 20091.3 Da    PI: 11.9678
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22474AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.4e-1171116348
                                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                                el+r rrk++NRe+ArrsR+R++++ eeL++ +++L ae++aL+ +
  Oropetium_20150105_22474A  71 ELRRLRRKISNRESARRSRARRRQRAEELARAADALRAERRALAAR 116
                                689***************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.3E-767116No hitNo description
SMARTSM003384.2E-669133IPR004827Basic-leucine zipper domain
PfamPF001701.3E-771116IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.97971116IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.56E-672119No hitNo description
PROSITE patternPS0003607691IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MLSSVVGAEV MHLMDLGLPG MDACFGFDFD FNASTTSCGA TDASSQSQVA TTTTKAGHNN  60
NGGHRDEDMV ELRRLRRKIS NRESARRSRA RRRQRAEELA RAADALRAER RALAARRDAA  120
AARALAVRRD NARLLAEAXX XXXXXXXXNR QSVLLLALAR ARLARTMPAP NPTGVVPSSS  180
MMTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22474A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665488.14e-12ocs element-binding factor 1-like
TrEMBLA0A1D6L6611e-10A0A1D6L661_MAIZE; Ocs element-binding factor 1
STRINGGRMZM2G177046_P012e-11(Zea mays)