PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22490A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 146aa    MW: 16523.8 Da    PI: 10.248
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22490AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF351.8e-111353343
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                               ie+++ r+ t+ kRr+g+ K    LS+L++a+va+++ +++
  Oropetium_20150105_22490A 13 IESERERNLTYFKRRAGLYKSIADLSTLTGAKVALVVEAEN 53
                               9***********************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.8E-4168IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-12756IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.6991053IPR002100Transcription factor, MADS-box
PfamPF003199.3E-141353IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MNRRIRRSGI NYIESERERN LTYFKRRAGL YKSIADLSTL TGAKVALVVE AENKDKTVEE  60
KRAKVSKSRL QEILETLESA KFISDDVEDL GAHELRNMLH RLLMVNGQVD NQVKAATVPP  120
NQNLAHSDNF NLNPVVPPQR RTIVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22490A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.27e-07MIKC_MADS family protein