PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22554A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 306aa    MW: 32495.9 Da    PI: 8.0078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22554AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-14118169155
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +r++h ++Er+RR+ +N+ ++ Lr l+P+a   + ++ + a+++  A++Y+k+L+
  Oropetium_20150105_22554A 118 QRMTHIAVERNRRRLMNEHLASLRALIPSA---YIPRGDQATVVGGAIDYVKQLE 169
                                79****************************...********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-15109178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-13116172No hitNo description
Gene3DG3DSA:4.10.280.105.2E-14116172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.875117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAVMEQWSDQ QAAAAAQMPF LALLHQGASM VEETTDDDDK QRVAFARAAA ASDFDLLESC  60
VTQAAAAAVT TVASSSSAPP ASNKRMRTMK RSRSRPRAAA AAVPQQEKRK KPEEAESQRM  120
THIAVERNRR RLMNEHLASL RALIPSAYIP RGDQATVVGG AIDYVKQLEQ QLVALQAEAA  180
ARRGGCCAPA SDTGVFVSPQ YTSYSSSQAR GGGVDVEAMA AVGGHVRVRV AGRRWPGRLV  240
RAVAALEDLR LPVLHLAVTS VGHDAVVYCF NLKMEEGCEV ATADEVATVV HQIFAYAAAA  300
GTCCC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994KRSRSR
2118129RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22554A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798239.11e-116transcription factor bHLH57-like
TrEMBLA0A1D6PKX51e-124A0A1D6PKX5_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGSi040271m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.18e-34bHLH family protein