PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22628A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 193aa    MW: 20689.8 Da    PI: 6.8931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22628AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41e-0772113955
                                HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                 r RR+ri ++ +eL +l+P         +ls a++L++A +++k Lq
  Oropetium_20150105_22628A  72 ARERRKRISQKTAELSRLIPGgH------RLSTADMLQEAARHVKLLQ 113
                                599*****************955......9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.21163112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-869118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1070121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-971116No hitNo description
Gene3DG3DSA:4.10.280.101.2E-772120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-573113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MALSFHQTTA PVFGGLPAPD AADMTTFHPE VSEALLGFVY DPLDPFSDAA IDELLGIPNA  60
AAAGFTGPST AARERRKRIS QKTAELSRLI PGGHRLSTAD MLQEAARHVK LLQAQVGMLA  120
LMHSVEDKGK MTITAQEEMH ALLTNGRVQE HLAAEGMCLV PRKLVDAVAR DKAVKSNPLV  180
NRDLSRFVVS LQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22628A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661333.15e-51uncharacterized protein LOC101765829
TrEMBLA0A3L6S6L12e-53A0A3L6S6L1_PANMI; Uncharacterized protein
STRINGPavir.J05526.1.p8e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-23bHLH family protein