PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22669A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 368aa    MW: 39888.2 Da    PI: 5.0292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22669AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.3e-12198240754
                                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Oropetium_20150105_22669A 198 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 240
                                79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.44191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15196267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.28E-5198245No hitNo description
Gene3DG3DSA:4.10.280.106.9E-15198254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9198240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MELDEETFLD ELMSLRREAS SSSAPWRQAY PSGGGVMMSD LLFYGGEGGT ETRSGMADLL  60
SPAFAHQELP PMPPPPPPPP PPLPHPHEDF INFDCLSEVC NPYRTSAAIA VVPGEVAAAA  120
AGAQMTTLAH IHDAVMMEEE TSGDKGQYGL VGSPTTFMFR GQSSSEMTMA DNIVRACGGA  180
HHHHRSKMHG APPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYVKEL  240
TERIKLLEDE IGASPDDLNL LNALVNDSSS NNNEMMVRNS TKFDVEKRGN GSTRIEICCP  300
ANPGVLLSTV SALEVLGLEI EQCVVSCFSD FGMQASCLQQ DGKSQVISTD EIKQALFRSA  360
GYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199206ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22669A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985797.11e-166transcription factor bHLH61
SwissprotQ9LSL12e-64BH093_ARATH; Transcription factor bHLH93
TrEMBLK4AC631e-165K4AC63_SETIT; Uncharacterized protein
STRINGSi036470m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-64beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]