PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22686A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27475.4 Da    PI: 9.585
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22686AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.2e-2875124251
                                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                ri+n++ rqvtfskRrngi+KKA EL +LCdaev +iifsstg+lyey+s
  Oropetium_20150105_22686A  75 RIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLIIFSSTGRLYEYAS 124
                                8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.95966126IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-4066125IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-3267147IPR002100Transcription factor, MADS-box
CDDcd002652.41E-4467134No hitNo description
PRINTSPR004043.7E-286888IPR002100Transcription factor, MADS-box
PROSITE patternPS00350068122IPR002100Transcription factor, MADS-box
PfamPF003191.3E-2575122IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-2888103IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-28103124IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
PPAKFTNPSV IVFLSTPPNN SLLSEKAAGS SPSRAPAGSH ISSLLLPYCC LLVLPRARLF  60
RSLRTMGRGK IVIRRIDNST SRQVTFSKRR NGIFKKAREL AILCDAEVGL IIFSSTGRLY  120
EYASTSMKSL IDRYGRMKEE EEHVANLNSE LKGGSKLETT TAQLARKSSG SLIQQDNMEL  180
HKKVNLIRQE NMDLYKKLCE KEATSEVSHD SLTPYNFAVV DNDNVHIELN TPPQENDAEQ  240
IAQPKLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-2166146181MEF2C
5f28_B9e-2166146181MEF2C
5f28_C9e-2166146181MEF2C
5f28_D9e-2166146181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22686A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3707328e-71AK370732.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2116B15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319518.15e-80MADS-box transcription factor 27 isoform X1
SwissprotQ6EP497e-72MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0E0PA493e-90A0A0E0PA49_ORYRU; Uncharacterized protein
STRINGORUFI04G16410.14e-91(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.15e-49AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]