PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22775A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 227aa    MW: 24841.3 Da    PI: 5.8502
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22775AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.72.1e-10281611128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr. 76 
                                lppG+rF+P    l+   L ++  + +      +   ++ + ++iy v P+ Lp  k+     +  f  +++   a +    r 
  Oropetium_20150105_22775A  28 LPPGVRFRPGVPCLLEALLIPRSLSGHtdpsghIARGDIAEGIEIYPVRPEALPlPKC-----NRGFDRPAAAVLAGSGTDARl 106
                                79*****************9987776646665444434667779*********93233.....233545555555555556665 PP

                        NAM  77 atksgyWkatgkdkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                                +++ g+W   g++ke + +  + ++   +k +vfyk  ra   + + W m+e rl
  Oropetium_20150105_22775A 107 VAAGGIWLPYGNEKECYIRedGAAVHAFRKHFVFYKPaRAGGHKLSAWRMEELRL 161
                                999************9998656667899*******872444455699*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-1324187IPR003441NAC domain
PROSITE profilePS5100518.40828188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MQHCPEAQAL RDPSHPMAQQ PQPATEMLPP GVRFRPGVPC LLEALLIPRS LSGHTDPSGH  60
IARGDIAEGI EIYPVRPEAL PLPKCNRGFD RPAAAVLAGS GTDARLVAAG GIWLPYGNEK  120
ECYIREDGAA VHAFRKHFVF YKPARAGGHK LSAWRMEELR LDETAPAFRG VTFHPSAKDL  180
VILKVYIDSE IPDEEPLIEY YTSNSDDEDK EITMRDAIAA LSPRVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22775A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.13e-08Arabidopsis NAC domain containing protein 26