PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22834A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 88aa    MW: 10492 Da    PI: 11.896
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22834AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-082568346
                               SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46
                               ++T+ +de l +++ ++Gg+ +Wk + r +  gRt   ++ rw  
  Oropetium_20150105_22834A 25 PFTAADDEELQRLFLRHGGRwSWKEVGRAVH-GRTSRVLRRRWKE 68
                               89*****************************.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.82E-15171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-6128IPR009057Homeodomain-like
PROSITE profilePS5129413.112121IPR017930Myb domain
PROSITE profilePS512947.7072374IPR017930Myb domain
CDDcd001670.001222569No hitNo description
PfamPF139213.8E-62671No hitNo description
Gene3DG3DSA:1.10.10.608.4E-72968IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MPGRSPKQCR DRLREHLARD LYHRPFTAAD DEELQRLFLR HGGRWSWKEV GRAVHGRTSR  60
VLRRRWKEIR NSDAFLSKLW KPRDAAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22834A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821894.12e-35transcription factor MYB73-like
TrEMBLA0A2T7F8162e-34A0A2T7F816_9POAL; Uncharacterized protein
STRINGSi020066m3e-32(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-10myb domain protein r1