PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_22887A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB_related

Protein Properties

Length: 188aa MW: 20091.4 Da PI: 9.7923

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_22887A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2.1e-18	14	72	1	48
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde l ++++++G g +W++Ia +++ gRt++++k++w+++l Oropetium_20150105_22887A 14 KGRWTKEEDETLTRYIQEHGEGlwrtlpknagllRWSLIAGHLP-GRTDNEIKNYWNSHL 72 79****************************************.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.33E-15	3	77	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-21	5	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.197	9	76	IPR017930	Myb domain
SMART	SM00717	4.4E-16	13	74	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-16	14	72	IPR001005	SANT/Myb domain
CDD	cd00167	4.34E-14	16	72	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MGRAPCCEKV GLKKGRWTKE EDETLTRYIQ EHGEGLWRTL PKNAGLLRWS LIAGHLPGRT 60 DNEIKNYWNS HLSRRASDFR GGSDGVVVNV DLSKLPGGGK RRGGRTSRGG AAAAGKGGNV 120 KKGNGKGKAK EKVMDVAPPR KAKGEQEQMD TNGPTPSSQQ CGEEEHASAS GVTSDGLEDG 180 PLGLNEEM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_22887A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF521880	1e-41	AF521880.1 Zea mays R2R3 Myb transcription factor MYB-IF35 mRNA, complete cds.
GenBank	BT039901	1e-41	BT039901.1 Zea mays full-length cDNA clone ZM_BFc0050D21 mRNA, complete cds.
GenBank	BT063308	1e-41	BT063308.1 Zea mays full-length cDNA clone ZM_BFc0051B20 mRNA, complete cds.
GenBank	BT088200	1e-41	BT088200.1 Zea mays full-length cDNA clone ZM_BFc0061H17 mRNA, complete cds.
GenBank	HQ858721	1e-41	HQ858721.1 Zea mays clone UT1188 MYB-IF35 transcription factor mRNA, partial cds.
GenBank	HQ858768	1e-41	HQ858768.1 Zea mays clone UT1749 MYB transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819210.1	1e-55	myb-related protein P-like
Swissprot	P27898	4e-37	MYBP_MAIZE; Myb-related protein P
TrEMBL	A0A0A9JQV1	1e-59	A0A0A9JQV1_ARUDO; Uncharacterized protein
STRING	Si002107m	6e-55	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	4e-36	myb domain protein 111

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_22887A

Publications ? help Back to Top
Robbins ML,Sekhon RS,Meeley R,Chopra S A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize. Genetics, 2008. 178(4): p. 1859-74 [PMID:18430921] Sidorenko L,Chandler V RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene. Genetics, 2008. 180(4): p. 1983-93 [PMID:18845841] Robbins ML,Wang P,Sekhon RS,Chopra S Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism. PLoS ONE, 2009. 4(12): p. e8231 [PMID:20011605] Rhee Y,Sekhon RS,Chopra S,Kaeppler S Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize. Genetics, 2010. 186(3): p. 843-55 [PMID:20823340] Morohashi K, et al. A genome-wide regulatory framework identifies maize pericarp color1 controlled genes. Plant Cell, 2012. 24(7): p. 2745-64 [PMID:22822204]