PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22941A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 763aa    MW: 86095.6 Da    PI: 6.3703
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22941AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP117.37.9e-37126202278
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                Cqv+gC+adls a++yh+rhkvCe h++++vv ++ +e+rfCqqCsrfh l+efDe+k+sCr+rLakhn rrrk q+
  Oropetium_20150105_22941A 126 CQVDGCQADLSGARDYHKRHKVCEPHTRSTVVRIKCVEHRFCQQCSRFHLLQEFDEGKKSCRSRLAKHNVRRRKVQM 202
                                **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-29119187IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.368123200IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-34124203IPR004333Transcription factor, SBP-box
PfamPF031103.4E-28126199IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.94E-5570684IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MEAQFLLKEN GNQTDVASGH QNNSLNREWN LNEWRWDTHL FLATPSNTMP SDCGGREYIR  60
SSQGEIDFGV VDKRRRVSPE EGSVECSNAA AKDYGENRSV VVQRAGSSEE ERYRKGASSS  120
SSAPFCQVDG CQADLSGARD YHKRHKVCEP HTRSTVVRIK CVEHRFCQQC SRFHLLQEFD  180
EGKKSCRSRL AKHNVRRRKV QMQPAVDGHQ SLRNTLFLLL KQLSGLESGS SSERVNHPNH  240
LVNLLENLAS IVGSQAYQDM LKNANSISIA SNAGNYIANG CTMHEQNRLP IHIGNESFPE  300
ERPVKRRVQD FDLNDAYTED VEILNWLSHY PSEMESYIRP GCVILTVYLR LPNWMWDELD  360
DDPAPWIEKL VSMPNCGFWS TGWVYARVQN WLTLCCNASS WQPVIGDKHQ ILCVTPVAVA  420
CSSTAKFSVK GFNIVQPTTK YIEDYDQSNL SIPFIVTEED VCSEIRMLEH ELNLISVGET  480
LEQIDDRMAS HDQALHFLQE IGWLLQRSHV QAMSDQAQYS IEGFPVGRFR WLLSFAVDHE  540
WCAVVTKLLD IMFEGYIDLD VPSPVEFAQG LNLLFAAVNK RSKPLVECLL RYTMANYDPV  600
DRRAANPVQF LFTPEMTGSS NITPLHTAAT ISDAAGVLDA LTDDPQQMGI SVWKNALDAT  660
GFTPEDYARK RGFISYIQMV EEKIDQRIPK AHLSITIASG PCTTNIVAYH PQTSRFLSNR  720
PAVLSLVAIA AVCVCVGLLL RSPPFVRCMR PFLWEHIKWG PK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-26116199184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276KRRRV
2301306RPVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22941A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020405796.10.0squamosa promoter-binding-like protein 1
SwissprotQ9LGU70.0SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBLA0A1D6MRF80.0A0A1D6MRF8_MAIZE; Squamosa promoter-binding-like protein 8
STRINGGRMZM2G133646_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.13e-94squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang H,Zhai J,Mo J,Li D,Song F
    Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance.
    J Integr Plant Biol, 2012. 54(9): p. 652-62
    [PMID:22889013]
  3. Zhang H, et al.
    Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.
    Plant Cell Rep., 2014. 33(10): p. 1745-56
    [PMID:25113543]