PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22950A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 240aa    MW: 23467.5 Da    PI: 8.5109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22950AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.58.5e-212471559
                               -TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY 15 vkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                                kg+++pr+YYrCt+a  Cpv+k+v+r+aed++++++tYeg+Hnh+
  Oropetium_20150105_22950A  2 AKGNPCPRAYYRCTMAvACPVRKQVQRCAEDKTILITTYEGNHNHP 47
                               59**************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.299149IPR003657WRKY domain
SMARTSM007747.3E-17148IPR003657WRKY domain
PfamPF031062.3E-16247IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.1E-20249IPR003657WRKY domain
SuperFamilySSF1182901.12E-16249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAKGNPCPRA YYRCTMAVAC PVRKQVQRCA EDKTILITTY EGNHNHPLPP AATTMANTTS  60
AAAAMLLSGP APSRDGAAAA FLGHGHPAAA LFHHSAAAIP YASTMATLSA SAPFPTITLD  120
LTQAPGTGAG GLHRPPPGGI GIHPAAAAGM PFPTVTAAIA ADPNFTTALA AAISSVMGGG  180
GGGGAAPHHQ TTTPRGNEVV SGEGGTSTTA PPPTTTAAPL AAASASPRFA TQSCTTSTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22950A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673952.15e-90probable WRKY transcription factor 31 isoform X2
SwissprotQ9XEC31e-49WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A1D6MRA76e-88A0A1D6MRA7_MAIZE; Putative WRKY transcription factor 47
STRINGGRMZM2G327349_P011e-88(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-39WRKY family protein