PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22956A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 169aa    MW: 18587.7 Da    PI: 8.338
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22956AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.9e-1781127455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Oropetium_20150105_22956A  81 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 127
                                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-2075137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.12777126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.28E-1580131No hitNo description
PfamPF000102.6E-1481127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-2081135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1783132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MNKIIPDQKR VEARKAHEAI TIAASSVCSG NGAGIVKDES CQQKTKSQAE CSASQDDDLD  60
ESGGLRRSSS RGTKRSRTSE VHNLSERRRR DRINEKMRAL QELIPNCNKI DKASMLDEAI  120
EYLKTLQLQV QVENQHFSVP SSTQSESSQL LDGGVKRTNS VVRDGAET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22956A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022523e-54AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817917.18e-64transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
SwissprotQ0JNI98e-57PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A2U8KGL02e-63A0A2U8KGL0_9POAL; Phytochrome-interacting factor-3
STRINGPavir.Ea01048.1.p2e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-30phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]