PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23101A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20093.3 Da    PI: 9.9758
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23101AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.73.5e-191660145
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               kri   s rqv fskRr+g++KKA+ELS+LC++ v ++ fs+ g+
  Oropetium_20150105_23101A 16 KRIARVSARQVCFSKRRQGLFKKASELSILCGTMVGIVAFSPAGR 60
                               68888999**********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-25867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.675868IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-23881IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-161030IPR002100Transcription factor, MADS-box
PfamPF003194.5E-221763IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MREGKKSMGR RRIQIKRIAR VSARQVCFSK RRQGLFKKAS ELSILCGTMV GIVAFSPAGR  60
PYSLGYPSIH AVIDEFLTLG NHSSPTMDHR IPNVSGVQNA LVLEYNELKE LVRTENLRTK  120
KLKEEIEQKD CKHYTPDISG LGPVELHEIY NNLKALDGDI KGKIFEVAFG LPNIDPFVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23101A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-29AGAMOUS-like 29