PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23150A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 241aa    MW: 26566.1 Da    PI: 5.8604
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23150AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B387.11.5e-2748138192
                                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                f+kvltpsdv+k++rlv+pk++ae++   + +++++l +ed+ g  W+++++y+++s++yv+tkGW++Fv+a  L +gD+v F+
  Oropetium_20150105_23150A  48 FDKVLTPSDVGKLNRLVVPKQHAERFfPVDAATGTQLCFEDRGGAPWRFRYSYWGSSQSYVMTKGWSSFVRAASLAAGDTVSFY 131
                                89************************9666778899************************************************ PP

                                E-SSSEE.. CS
                         B3  84 ldgrsefel 92 
                                +    ++++
  Oropetium_20150105_23150A 132 R--GAGGRY 138
                                3..355555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-3740137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-2844139IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-2546140No hitNo description
PfamPF023622.9E-2548136IPR003340B3 DNA binding domain
SMARTSM010192.4E-2048146IPR003340B3 DNA binding domain
PROSITE profilePS5086313.71948146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDLSLSTLVE AARQVQEEHR VAVGQDRRRA GGGGGQQGDA VEEREHMFDK VLTPSDVGKL  60
NRLVVPKQHA ERFFPVDAAT GTQLCFEDRG GAPWRFRYSY WGSSQSYVMT KGWSSFVRAA  120
SLAAGDTVSF YRGAGGRYFI DYRHCERRRR EISFAPAVSE WPFLDRMQRS RSRTTGGEAG  180
ASTTTNAAGT VPVAAAHHHH DAEVGPSGTK SFRLFGFNVE CTNDDDDAAM AEEEYDDDDN  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-45411431111B3 domain-containing transcription factor NGA1
5os9_B8e-45411431111B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23150A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046981e-104AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149641e-104AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-104CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664024.25e-85putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD58e-74Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A1E5WI632e-85A0A1E5WI63_9POAL; Putative B3 domain-containing protein
STRINGGRMZM2G180168_P012e-84(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-46B3 family protein