PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23172A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 373aa    MW: 39268.8 Da    PI: 7.927
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23172AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.4e-10105130127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +kt+lC+ f++ GtC+y  +C+FaHg+
  Oropetium_20150105_23172A 105 FKTKLCCKFRA-GTCPYVTNCNFAHGM 130
                                69*********.*************95 PP
2zf-CCCH18.14.8e-06187212126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                yk + C+ f+    C+yGd C+F H+
  Oropetium_20150105_23172A 187 YKGRHCKKFYTEEGCPYGDACTFLHD 212
                                77888********************7 PP
3zf-CCCH43.36e-14252277126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                +kt++C+ +  tG+C++G++C+FaHg
  Oropetium_20150105_23172A 252 WKTRICNKWEMTGYCPFGSKCHFAHG 277
                                8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-14102137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-8102135IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014104130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028104131IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7105130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629186214IPR000571Zinc finger, CCCH-type
SMARTSM003560.3186213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7186214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-8186214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-18245281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-10248282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422251279IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9251278IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-11252277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDYSNAIHII PDAAGPDAWA NAAPPTPGDS GIWATEDDYR QWSADAGSGG GGYGDRNPSS  60
RAGSEQPPPG KKLRGGGGVP GXXXXXXXXX XXSTSKSRAI GKMFFKTKLC CKFRAGTCPY  120
VTNCNFAHGM EELRKPPPNW QEIVAAHEEA TEQREEHQIP IMTSASVVAG DGGGGGGGGS  180
QGGGRAYKGR HCKKFYTEEG CPYGDACTFL HDEQSKARES VAISLSPSVG GGGGGYNAAS  240
ANGVQVPKPS NWKTRICNKW EMTGYCPFGS KCHFAHGAAE LHKYGGGLAD LDGNTVSTPD  300
SKQGGLSAKA PADAAVASNV MPPHADVYHL GIQSQRSTIG SQRSGQVPRP IQKWKGPDKI  360
SRIYGDWIYE TE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23172A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321178.10.0zinc finger CCCH domain-containing protein 56 isoform X2
SwissprotQ84UQ31e-175C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1B6PFN80.0A0A1B6PFN8_SORBI; Uncharacterized protein
STRINGPavir.Fb00417.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-100C3H family protein