PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23175A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 165aa    MW: 17511 Da    PI: 5.1929
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23175AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like315.4e-101203655
                    G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                               m+vk+Ltl+hvkSHLQ+YR+
  Oropetium_20150105_23175A  1 MDVKDLTLAHVKSHLQMYRT 20
                               9******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-8121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDVKDLTLAH VKSHLQMYRT VKNTERPAAS SDQADGFENG SAGEICDDNS LDLHGYSNAG  60
GGGGRQEMAS RHGRLAAAAA CNDHGSSTGA HGALWNSSSR EDWTTTGFPS ECNTGSMQSL  120
KEQMQSKSLE ILSDMNSCVS ETTTSSTSEL NLEFTLGRPH NRPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23175A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570082e-64EU957008.1 Zea mays clone 1580405 KANADI-like transcription factor FEATHERED mRNA, complete cds.
GenBankKJ7268192e-64KJ726819.1 Zea mays clone pUT3358 G2-like transcription factor (GLK55) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821359.16e-92probable transcription factor RL9 isoform X1
TrEMBLA0A3L6RHT46e-91A0A3L6RHT4_PANMI; Putative transcription factor RL9 isoform X1
STRINGPavir.Fa01877.1.p2e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-17G2-like family protein