PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23317A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 888aa    MW: 98006.8 Da    PI: 8.3904
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23317AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-08240261426
                                ---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                e C +fa+ G C++G++C+FaH+
  Oropetium_20150105_23317A 240 EQCYNFAK-GRCSRGASCRFAHD 261
                                57******.*************7 PP
2zf-CCCH22.81.6e-07300319525
                                --SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                +C+ffa+ G+C++G++C++ H
  Oropetium_20150105_23317A 300 PCKFFAA-GQCRRGENCPYLH 319
                                8**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1156178IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.009159179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.807236263IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-4237262IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-6240261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5241261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.446295322IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-6295321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-7296320IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5299319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4300321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MTGEPRRHRS KWDTKEGPPD IVEISEDESP RNKDIHRKGG DLLPKPDASV HRGSGGHEQE  60
HHDGVNKDMK DIQSKAPSER LQPSKLADEY DDKGWGRAAL EKPRGNQGTN RYADDRRRGE  120
GWGAALDRGY SSRVSSDPDP WRPRSRSPSP RGSWNRSRRD FVAGKCRRGL SCRFPHEDGG  180
HRPFEEHYPA APRERYGYQS KEFIDSREQN DFLQGRQFRG RYNDETWERS EPRREYRSAE  240
QCYNFAKGRC SRGASCRFAH DDPAPHGGWR DEARQSAYDR VGPDSSYGNR IEQRRVNKNP  300
CKFFAAGQCR RGENCPYLHE EASQSQIEMS APDKLSNYND GPTGRGKFSN WGEQNNVVHA  360
TSQSASRDDR ENPVSQSIDR NGSRYEYENH HPKDAGKSQY QIIPQEDYGS QVHKNELAAS  420
QQTELLTSVQ PSADSINNDK VSGNDQSAPT RTAGNLSMYT GMHAGSVAEN LGQILQSQDV  480
ISQIHRPPTL PVTTHLQNSI SSLPSHNHMQ QSNFSVHTQE QFLVTQAAAN NSTHNVQGQP  540
VAPHMGHNQL GYGLEAQSLP NISAHNGQDG HNFSVAGRVP QDLSSIDLQR LGQDSGAQSQ  600
SVRNMQNFQQ VAPNVQIQNQ SLQGLSLVPP PSSADIVGAP VSHNAAKNED IQRVTASLAQ  660
YFGNAGLSAG TMGLQPSEPN INSSSMVTSS APPPAVQPNP WPWTQQHPGM VQAAPPAPSE  720
QPQQIPQTFQ MPVAVGSSNG NSLPLPQSGA LTGQAAASVV NETMPSGNKK GETKDPVAEA  780
NEDGETNKGK ESKALKMFKI ALADFVKEAL KPTWKEGQLS REVHKTIVKK VVDKVTSTVE  840
NTPPTKEKID IYMSFSKDKL NKLVQAYVGK YAKDKDRVKC PMCGRLK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23317A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820462.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_025820463.10.0zinc finger CCCH domain-containing protein 55-like
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLA0A2S3HZY10.0A0A2S3HZY1_9POAL; Uncharacterized protein
STRINGPavir.Fa02279.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.18e-10C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]