PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23320A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 803aa    MW: 87580.8 Da    PI: 5.444
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23320AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.9e-20119174156
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++ +++t +q++eLe++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k
  Oropetium_20150105_23320A 119 KKRYHRHTLHQIQELEAFFKQCPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 174
                                688899***********************************************999 PP
2START166.32.2e-523035071185
                                HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS
                      START   1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqW 72 
                                ela +a++elv++a+ +ep+Wv  +       e +n++e+ ++f+++ +      ++ea+r+++vv+m+++ lve l+d++ qW
  Oropetium_20150105_23320A 303 ELAVAAMEELVRMAQIGEPLWVPAAvdgvastEALNEEEYARSFPRGVGpklpeLRSEASRETVVVIMNHVSLVEMLMDVN-QW 385
                                57899*******************99******************99777********************************.88 PP

                                -TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE- CS
                      START  73 detla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRa 145
                                 + +     +a+tlev s+g      galqlm+ae+q++splvp R++ fvRy++q+ +g+w++vdvS+d  + +     ++R+
  Oropetium_20150105_23320A 386 WTLFStivsRASTLEVFSTGvagnynGALQLMSAEFQMPSPLVPtRESQFVRYCKQHADGSWAVVDVSLDGLRGNGV--AGMRG 467
                                777777777*****************************************************************975..9**** PP

                                EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
                      START 146 ellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                                +++pSg++i++++ng+s+vtwvehv+ +++  h l+r+l 
  Oropetium_20150105_23320A 468 QRRPSGCVIRELPNGYSRVTWVEHVEADDAATHDLYRPLX 507
                                *************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-21100174IPR009057Homeodomain-like
SuperFamilySSF466892.47E-19108177IPR009057Homeodomain-like
PROSITE profilePS5007116.471116176IPR001356Homeobox domain
SMARTSM003895.8E-19117180IPR001356Homeobox domain
CDDcd000861.81E-19119177No hitNo description
PfamPF000462.4E-17119174IPR001356Homeobox domain
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PROSITE profilePS5084833.302294615IPR002913START domain
SuperFamilySSF559616.18E-26296495No hitNo description
CDDcd088754.51E-102298506No hitNo description
SMARTSM002345.0E-46303528IPR002913START domain
PfamPF018528.0E-43304507IPR002913START domain
Gene3DG3DSA:3.30.530.206.5E-5376492IPR023393START-like domain
SuperFamilySSF559617.42E-15609774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MPGGMMVPGR NMPTAAVMLG RNGGALACYT PITLGENLMD GQHQHQLSAL QQHYQNNGQQ  60
QLLQQAATSE SDAHCQRKDE LAMHSKSSSN NMESGGGSGS GSGEELQEDE DLALQRPLKK  120
RYHRHTLHQI QELEAFFKQC PHPDDKQRKE LSRELGLEPL QIKFWFQNKR TQMKTQQERH  180
ENSHLRAEND KLRAENARYK EALATASCPN CGGPATAVIG EMSFDEQHLR LENARLHDEI  240
DRISSIAAKY VGKPVGSLLP GGSNISTGAA AALYPPLLAS HHLPGAADGL ALHHGIDKPL  300
VIELAVAAME ELVRMAQIGE PLWVPAAVDG VASTEALNEE EYARSFPRGV GPKLPELRSE  360
ASRETVVVIM NHVSLVEMLM DVNQWWTLFS TIVSRASTLE VFSTGVAGNY NGALQLMSAE  420
FQMPSPLVPT RESQFVRYCK QHADGSWAVV DVSLDGLRGN GVAGMRGQRR PSGCVIRELP  480
NGYSRVTWVE HVEADDAATH DLYRPLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  600
XXXXXXIILN AATSFWLPVT PAHVFGFLRD DATRSEWDIL SNGGDVQEMA HVANGSDQGN  660
AVSLLRVNNT KSNQNNMLIL QECLTDATGS YVIYAPVDAA SMNVVLSGGD PDYVPLLPSG  720
FAILPDGRGH GADGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLITCTV ERIKAAVAAD  780
ADNGAAGAPP GAWPIGDQAD AS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23320A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972909.10.0homeobox-leucine zipper protein ROC7
SwissprotA2YR020.0ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
TrEMBLK3YGB10.0K3YGB1_SETIT; Uncharacterized protein
STRINGSi013279m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2