PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23421A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 94aa    MW: 10610.5 Da    PI: 6.5414
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23421AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.2e-08447344
                               SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrw 44
                                WT eE   + +a + +     +W  +ar +g+g+t  ++k ++
  Oropetium_20150105_23421A  4 EWTDEENRVFERALAVYADTpdRWQNVARAVGNGKTVDDVKKHF 47
                               7****************9889**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.3E-4153IPR001005SANT/Myb domain
PROSITE profilePS5129311.977155IPR017884SANT domain
SuperFamilySSF466891.3E-9351IPR009057Homeodomain-like
PfamPF002491.8E-5448IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-4448IPR009057Homeodomain-like
CDDcd001671.05E-4447No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSEWTDEEN RVFERALAVY ADTPDRWQNV ARAVGNGKTV DDVKKHFARL EVDVGNMESE  60
ARRGSQFGGG RSSSRRDESE GGNTREERRL RLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-145911188RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23421A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965389.17e-24protein RADIALIS-like 3
TrEMBLA0A0A9VQK38e-27A0A0A9VQK3_ARUDO; Uncharacterized protein
STRINGSi008591m3e-23(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-18RAD-like 6