PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23429A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HB-other
Protein Properties Length: 214aa    MW: 23925.2 Da    PI: 9.7128
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23429AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.28.5e-0649743751
                               C...........TS-HHHHHHHHHHH CS
                   Homeobox 37 l...........gLterqVkvWFqNr 51
                                            ++ +qV++WFqN+
  Oropetium_20150105_23429A 49 FtasragvagrvVIKPKQVRTWFQNH 74
                               5555555555449************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEGRRVDSTA PISFHFLPAE VAEMEEIVRQ LIDSIYPRRH VIYELAGKFT ASRAGVAGRV  60
VIKPKQVRTW FQNHYYGPRR KEAMETRRFA ANKHQASSSS VAPRAQARTI SGSKRMAKGQ  120
FVGGKMLTGA YEHNEELPFN SDALVHAIDR RRHGYSESSC KFLVRYEHDG TEEIVPLSKL  180
RPKVVYTHGL PEGSGVATRC TEAAPVIIEV DDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23429A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.17e-09sequence-specific DNA binding transcription factors;sequence-specific DNA binding