PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23465A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 203aa    MW: 21437.7 Da    PI: 10.4186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23465AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83.1e-11111159255
                                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                r++   + ++RR+riN+++  L+el+P+      +K++ +++L kA+ Y+k +q
  Oropetium_20150105_23465A 111 RKSPTTAAKNRRERINERLKVLQELVPNG-----RKVDTVTMLDKAITYVKFMQ 159
                                55666788*******************96.....6****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.301109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-15111171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.13E-13111163No hitNo description
Gene3DG3DSA:4.10.280.105.4E-13111167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8113159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MALVSELAAA TLCFDDGSIV VVDPKAPLPV VNGSSAASNV FAIEGGGNAG AGAMPPPPST  60
NKKRRSLAHV PRQHDGAVED DDTKATKKHC GGKTTKAAKR AMEPIATPPP RKSPTTAAKN  120
RRERINERLK VLQELVPNGR KVDTVTMLDK AITYVKFMQL QLKVLQTDAF WPTQGGKAPE  180
MSQVKEALQA ILLSASSSSR CA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23465A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158740.13e-46transcription factor bHLH69-like
SwissprotQ9FJ007e-39BH086_ARATH; Putative transcription factor bHLH086
TrEMBLA0A1E5UPT35e-46A0A1E5UPT3_9POAL; Transcription factor bHLH83
STRINGEMT097991e-45(Aegilops tauschii)
STRINGTraes_7DS_4053B6E88.11e-45(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.17e-38RHD SIX-LIKE 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  3. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]