PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23557A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YC
Protein Properties Length: 306aa    MW: 32294.9 Da    PI: 11.1956
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23557AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC25.52.8e-082262731158
                      NF-YC  11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfilel 58 
                                + ++d+   ++P+ar++++++a++d  + s+ea  l+ ka elf+ ++
  Oropetium_20150105_23557A 226 GAVADMGTCSFPMARVRQLMRAEDDTIRASSEAVFLINKASELFLAKF 273
                                567889999***********************************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.55E-10220285IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-11231284IPR009072Histone-fold
PfamPF008089.7E-9235282IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAGKKPTAVK PASPSAQRSN SATFKASAAG AKVRSPAKPR KNSKGKPAPP KMARDKLATE  60
AGAKRKKQQA SGEAGTKPKK KGKKRDEQEG MPQKEAKSTK KQQSSGKSED PAPTPSKKKQ  120
QSGKAATPSK KQQPADKAEK PAAAAPTPTP TKKQKSSGKA EKPGPASPTP TKKQQKGGTG  180
KSTPSKKKRE DAEPQKEVRS LKRASGEGEA SAPPTPAKKE RKGKRGAVAD MGTCSFPMAR  240
VRQLMRAEDD TIRASSEAVF LINKASELFL AKFADDAYRN ALKDHFVPQR LRAEDALKAA  300
AANLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16383KRKKQQASGEAGTKPKKKGKK
27683KPKKKGKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23557A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9487902e-41EU948790.1 Zea mays clone 385255 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792625.11e-79muscle M-line assembly protein unc-89-like isoform X1
TrEMBLA0A0A8YHY95e-90A0A0A8YHY9_ARUDO; Uncharacterized protein
STRINGPavir.Ia00103.1.p1e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128261922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.19e-14nuclear factor Y, subunit C10