PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24151A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 597aa    MW: 63497.8 Da    PI: 6.2766
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24151AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-06217238526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                +C+ f ++  C++Gd C +aHg
  Oropetium_20150105_24151A 217 PCPEFKKGAGCRRGDMCEYAHG 238
                                8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.06E-637100IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.6675199IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.1E-752100IPR020683Ankyrin repeat-containing domain
SMARTSM003569.8E-4212239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4215239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258217240IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925248272IPR000571Zinc finger, CCCH-type
SMARTSM0035687248271IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MAETSDAAAV SARLLELAAD DDAVALGDLL AAHPSLADEP APWYSPARGA EPLTPLMVAA  60
AYGSVSCVDV LLSPPYLADP NRASLSTHST PLHLAAAGGA PSAPVXXXXX XXXXXXPTLL  120
DHLQRRPSDL VALPPNSLPL KNHLLSLLGA RKEWPPDPSL PDIKNGAYAS DDFRMYSFKV  180
RACSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FKKGAGCRRG DMCEYAHGVF  240
ESWLHPAQYR TRLCKDGVGC ARRVCFFAHT PEELRPLYVS TGSRGAMEMA AAMGMGMPSP  300
GASFTPPLSP SGAGSGVTGA WPQPSVPALC LPGSAGNLHL SRLRTSLSAR SMAVDELLAA  360
AEYDGLGSPA SVRSARGKTL APSNLDDLFS AEMASAAASR SPRYADQGGA PFSPTRKAAM  420
LNQFQQQQSL LSPRATATLN PEPVSPMSSR LLAALAQREK IQQQTLRNMS SRDLGSSASI  480
LVGSPVGSSW SKWGIPSGSG AQDWGADEDH ELSCLKRSSS FELRSGANGD EPDLSXXXXX  540
XXXXXXXXXX XXXXXAKESV GLLGQTGSHE GMNGEEDTAG VIGSWLEQLQ LDEMVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24151A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147048.20.0nucleic acid binding protein
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLC0HDR90.0C0HDR9_MAIZE; Zinc finger CCCH domain-containing protein 30
STRINGGRMZM2G027298_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-118CCCH-type zinc finger protein with ARM repeat domain