PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24230A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 251aa    MW: 27451.7 Da    PI: 10.228
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24230AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.92.9e-34171421128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                lppGfrFhPtd elv++yL++k+ +++l++  vi+ v ++ +++PwdLp    ++e e yfFs           ++r + sg+W
  Oropetium_20150105_24230A  17 LPPGFRFHPTDVELVMQYLRRKALSRPLPA-AVIPVVhEVARLDPWDLP---GTREGEAYFFSLXXXXXXXXXXRRR-ACSGFW 95 
                                79****************************.88999989**********...3467799******999877666666.578*** PP

                        NAM  84 katgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                katgk k+v+ +      k+ lvg+k+ L+f+    + g++tdWvmheyrl
  Oropetium_20150105_24230A  96 KATGKAKPVFLQgsgcggKRYLVGVKTALAFH----RGGTRTDWVMHEYRL 142
                                ***********97777655556**********....56889********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3915174IPR003441NAC domain
PROSITE profilePS5100538.68117174IPR003441NAC domain
PfamPF023656.7E-2218142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MECPVVAARD GQAPRQLPPG FRFHPTDVEL VMQYLRRKAL SRPLPAAVIP VVHEVARLDP  60
WDLPGTREGE AYFFSLXXXX XXXXXXRRRA CSGFWKATGK AKPVFLQGSG CGGKRYLVGV  120
KTALAFHRGG TRTDWVMHEY RLAVPGGVAE QRKQTAHDRV VHPVEWVVCR IFQKNSRRRP  180
NRDTAGETPG IHASSSAGLP GDQLRLLLPS SPQASTTSCV TGVTEVSDQD EVNSGSSIRD  240
APSTASQRDA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-2991767170Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24230A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957303.12e-94NAC domain-containing protein 41
TrEMBLK3ZWG05e-93K3ZWG0_SETIT; Uncharacterized protein
STRINGSi030942m9e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.22e-41NAC domain containing protein 41