PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24241A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 437aa    MW: 46115.1 Da    PI: 7.2938
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24241AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.62.7e-41120196278
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q+
  Oropetium_20150105_24241A 120 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDEAKRSCRKRLDGHNRRRRKPQP 196
                                **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-36112181IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.342117194IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.03E-39118199IPR004333Transcription factor, SBP-box
PfamPF031103.5E-31120193IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDWDLKMPVS WDLAELEHDA VPSISVATTP VAAAASGIAA AAAAAARGAP TRAAECSVDL  60
KLGGLGEFGA GDVMKEPPAK GPAVKAXXXX XXXXXXXSVS PLKRPRSGPG GAGGSQCPSC  120
AVDGCKADLS KCRDYHRRHK VCEAHSKTPV VVVAGREMRF CQQCSRFHLL AEFDEAKRSC  180
RKRLDGHNRR RRKPQPDNMS SGSFMTGQQG TRFSSFVAPR PEASWSGIIK SEDDSYYTHQ  240
VLSSRPHFAG LTSSYSKEGR RFPFLQDGDQ VSFSAGGAAT TPLEAGTVCQ PLLKVVAAPP  300
PESSSSNKIF SPDGLTPVLD SDCALSLLSS PANSSSVDVS RMVQPTEHIP MAQPLVPSLH  360
QFGSSPGWFA ACSQAPPASS GVTAGFTCPS MESEQQLNPV LVPSSDGHEM NYHGIFHLGG  420
EGSSDGTSPP LPFSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-28110193184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176193KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24241A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0538751e-123BT053875.1 Zea mays full-length cDNA clone ZM_BFb0379K14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803089.10.0squamosa promoter-binding-like protein 18 isoform X2
SwissprotQ0J0K11e-162SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A2T8KRA50.0A0A2T8KRA5_9POAL; Uncharacterized protein
STRINGGRMZM2G061734_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-42SBP family protein