PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24256A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ERF
Protein Properties Length: 134aa    MW: 15377.4 Da    PI: 4.9842
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24256AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.43.5e-081562355
                        AP2  3 ykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               y+GVr  + +grW+A+   +se +g      +g+f  + eAa a+++ ++ l g
  Oropetium_20150105_24256A 15 YRGVRLEP-DGRWAAH---VSEgDG--EGRFIGHFRKELEAALAHDRVALFLLG 62
                               9*******.9******...888666..77788*****99*********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.8E-51476IPR001471AP2/ERF domain
PROSITE profilePS5103212.6151470IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-111472IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-121470IPR001471AP2/ERF domain
PRINTSPR003673.1E-51526IPR001471AP2/ERF domain
PfamPF008471.1E-41562IPR001471AP2/ERF domain
PRINTSPR003673.1E-55272IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MSTVAAATPT PSRLYRGVRL EPDGRWAAHV SEGDGEGRFI GHFRKELEAA LAHDRVALFL  60
LGGAPTINFP PSFSIMERRF LRLCCTEAFV FRAVLDETYD VEYEFFLHDE FDTYLCPYVR  120
WRGEDSAWWL VEH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24256A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-09related to AP2 6l