PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24285A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 181aa    MW: 19458.8 Da    PI: 6.9912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24285AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-054971123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C++C + F++   L  H+++H
  Oropetium_20150105_24285A 49 YTCGYCRREFRSAQALGGHMNVH 71
                               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.89E-64776No hitNo description
PROSITE profilePS5015711.0744976IPR007087Zinc finger, C2H2
PfamPF139121.0E-54972IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MERDRHGRSL KQQTAWTPGH NFSLAAAAGY CFSSSSWPAA LSPPPSSSYT CGYCRREFRS  60
AQALGGHMNV HRRDRARLRQ CFPPPNPSNL QMRTAAPCRA APPIPNLNFL PPEPEPPAVY  120
SFFSTTTAMS AAETMKYASA AAVEVNLDLG IGGVCSHDGT AAAEDDGELD LELRLGCSWE  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24285A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975075.23e-49transcriptional regulator SUPERMAN
TrEMBLA0A368RR521e-47A0A368RR52_SETIT; Uncharacterized protein
STRINGPavir.J31403.1.p6e-51(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.12e-15zinc finger protein 11