PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_24589A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GRAS

Protein Properties

Length: 93aa MW: 10595.5 Da PI: 10.0566

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_24589A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	46.9	4.8e-15	2	72	211	281
GRAS 211 hrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++l de+vs++s+r++vL++++ ++Pk++ + + hn + Fl+rf e +++y+a fd+l++++p+++e+ Oropetium_20150105_24589A 2 KNLGDETVSINSARNRVLNTIRMMKPKIFMHGILNGLHNIPFFLTRFKEVMYHYAAKFDALDKTIPPDNEK 72 67889*************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.268	1	92	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-12	2	72	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MKNLGDETVS INSARNRVLN TIRMMKPKIF MHGILNGLHN IPFFLTRFKE VMYHYAAKFD 60 ALDKTIPPDN EKAPGTIILQ DHLPLTLMAM FH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_24589A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023157117.1	2e-34	scarecrow-like protein 34
Swissprot	P0C884	7e-20	SCL34_ARATH; Scarecrow-like protein 34
TrEMBL	A0A317Y830	3e-33	A0A317Y830_MAIZE; Scarecrow-like protein 9
STRING	GRMZM2G335814_P01	6e-34	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	3e-22	GRAS family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_24589A