PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_24671A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 227aa MW: 24098.9 Da PI: 5.8518

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_24671A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.3	2.7e-38	28	129	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+++C++apyf +e+ +++fa+vhk+FGasnv+kll+++pe++r da+ ++++eA++r+r+PvyG+v++i +l Oropetium_20150105_24671A 28 PCGACKFLRRKCVSECIFAPYFEQEHgAAHFAAVHKVFGASNVSKLLHQIPEDKRLDAVITVCFEAQCRLRNPVYGCVSHIIAL 111 7*******************999979**************************************************** PP DUF260 84 qqqleqlkaelallkeel 101 q+q+ +l++el++++++l Oropetium_20150105_24671A 112 QEQITTLQSELNYVQNQL 129 ************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.254	27	129	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.4E-38	28	126	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MFVGGTSSGG AGGXXXXXXX XXXXXXGPCG ACKFLRRKCV SECIFAPYFE QEHGAAHFAA 60 VHKVFGASNV SKLLHQIPED KRLDAVITVC FEAQCRLRNP VYGCVSHIIA LQEQITTLQS 120 ELNYVQNQLA AMEKQQSQVP PLPAFPQMSM SVGGFSDINL DLSFLLDEEA PPQQQQQHVN 180 MGAASRGAGG SGGVGDTGDL DALARELVRH GQEAGGSAPP PPGTYQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-33	27	129	10	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-33	27	129	10	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_24671A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510942.1	4e-61	LOB domain-containing protein 30-like
Refseq	XP_008776002.1	6e-61	LOB domain-containing protein 18-like
Swissprot	O81323	2e-56	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A1E5UT08	1e-62	A0A1E5UT08_9POAL; LOB domain-containing protein 18
STRING	XP_004510942.1	1e-60	(Cicer arietinum)
STRING	XP_008776002.1	2e-60	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	3e-56	LBD family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_24671A

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]