PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24745A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 219aa    MW: 24606.3 Da    PI: 9.1166
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24745AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.93.5e-2243104259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                                dDg++WrKYG K+  +s fpr YYrCt++   +C+++k+v+++ ++dp ++ +tY ++H+++
  Oropetium_20150105_24745A  43 DDGHQWRKYGEKKLSNSSFPRFYYRCTYKnemKCTATKQVQQKnTSDPPLFSVTYFNHHTCS 104
                                8***************************99999*******875167**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-2330104IPR003657WRKY domain
SuperFamilySSF1182903.14E-2235105IPR003657WRKY domain
PROSITE profilePS5081116.28337106IPR003657WRKY domain
SMARTSM007745.1E-3242105IPR003657WRKY domain
PfamPF031062.4E-2443103IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MALDSVPLYP GGDLESSRAT RTHQRISRKE QRSWTADTYA PYDDGHQWRK YGEKKLSNSS  60
FPRFYYRCTY KNEMKCTATK QVQQKNTSDP PLFSVTYFNH HTCSINSMGS HRGAGVQSPS  120
KEVSICFSAH SSSEQPTFLT SAATLPSPNI QPYRANQQFD RSAYARQFQL TGTTNSPVMM  180
EVDNFSEANS FSSSSTGALS RTLLPIGQSR CIEYFHFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-1543103968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24745A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586291e-66KU058629.1 UNVERIFIED: Panicum miliaceum WRKY20-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827915.19e-98probable WRKY transcription factor 46 isoform X1
TrEMBLA0A2T7E4I61e-98A0A2T7E4I6_9POAL; Uncharacterized protein
STRINGSi011007m2e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-18WRKY family protein