PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25001A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family DBB
Protein Properties Length: 403aa    MW: 43069 Da    PI: 4.7814
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25001AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.3e-074285542
                   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                C+ ++  e++  C  ++  lC+ C +e H        H++vpl
  Oropetium_20150105_25001A 42 QCNACGAAEARVLCCADEAALCAACDEEVHAAnklagkHQRVPL 85
                               7******99*********************66899999999986 PP
2zf-B_box29.51.5e-0997129335
                   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 
                                 +kC+ ++e    +fC +++ llC+dC +++H 
  Oropetium_20150105_25001A  97 VPKCDICQEASGYFFCLEDRALLCRDCDVSIHT 129
                                589*****************************3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.483885IPR000315B-box-type zinc finger
SMARTSM003365.7E-123885IPR000315B-box-type zinc finger
CDDcd000215.38E-94185No hitNo description
PfamPF006431.8E-54285IPR000315B-box-type zinc finger
SMARTSM003363.2E-1695142IPR000315B-box-type zinc finger
CDDcd000218.66E-1198142No hitNo description
PfamPF006431.2E-798137IPR000315B-box-type zinc finger
PROSITE profilePS501198.902100142IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
REGEARAPDP AASPPRRTPS YFGPPPEILA DAARCREGMK IQCNACGAAE ARVLCCADEA  60
ALCAACDEEV HAANKLAGKH QRVPLLPDDA AVASPAVPKC DICQEASGYF FCLEDRALLC  120
RDCDVSIHTV NSFVSAHQRF LLTGVQVGLD PADPVPPVAE KRVNAAGGSV FVPTKHLSRK  180
SPTVPSSGEG TDSVPSQNVT NGDYSRQNSV PTVRTGVVNW TMNNSMIRQL EPRPEYLSNE  240
GPVLLPSSQV TASFSNQING NNDGTYNLPL SGGDGSENLP DWPVDEFFSS SEFGPYFSFP  300
EHCSSKGDNT KLGSAEGSPQ CRLAEGFVAE ELLGLVPGLD AEESWTVPQV PSPPTASGLY  360
WKGNFHEAMF DGTMFVPEVS SHQSSQNNFA VPGGLKRRRR QF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25001A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811997.10.0B-box zinc finger protein 22-like
TrEMBLA0A2T7E2Y00.0A0A2T7E2Y0_9POAL; Uncharacterized protein
STRINGPavir.J07875.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-52light-regulated zinc finger protein 1