PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25411A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 205aa    MW: 21720.9 Da    PI: 10.2307
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25411AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.61.9e-284109198
                     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal...peeeredamsslvyeAearardPvyGa 76 
                                +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a     ++ r+++++sl+yeA+ r+ +PvyG+
  Oropetium_20150105_25411A   4 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAPgqgADHLRPAVFRSLLYEACGRIVNPVYGS 87 
                                6**************************************************9876557888*********************** PP

                     DUF260  77 vgvilklqqqleqlkaelallk 98 
                                vg+++++q+q  q+++e++l +
  Oropetium_20150105_25411A  88 VGLLWSGQWQAVQAAVEAVLKG 109
                                ***************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.6143112IPR004883Lateral organ boundaries, LOB
PfamPF031956.7E-234105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAPGQG  60
ADHLRPAVFR SLLYEACGRI VNPVYGSVGL LWSGQWQAVQ AAVEAVLKGD PVVRVASASA  120
DQPEAAATPP LGTRAACDIR HVAKDRDAAA AADLLRVSRV GRTKFKRASS SSTTSKTKTA  180
GNKPNGKRAS PSPGILTQEE HEPEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25411A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-128EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284041e-128KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628244.11e-90LOB domain-containing protein 40
SwissprotQ9M8862e-70LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0E0MX472e-89A0A0E0MX47_ORYRU; Uncharacterized protein
TrEMBLB9EX602e-89B9EX60_ORYSJ; Uncharacterized protein
STRINGORUFI01G19440.14e-90(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.15e-58LOB domain-containing protein 40