PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_25743A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 430aa MW: 43953.1 Da PI: 6.8402

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_25743A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.3	4.3e-06	315	355	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L Oropetium_20150105_25743A 315 ARLRRERVSERLRVLQRLVPGG-----SKMDTASMLDEAASYLKFL 355 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.95E-10	297	360	No hit	No description
PROSITE profile	PS50888	14.475	306	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.1E-12	312	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-13	312	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-9	315	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MDATFGWAGA AGCQHVNDDD YFSSRQVVGC ARFETDDAFL GACFGIQQQC DDDVIGGGAG 60 TTTCHVSSNF SGSAAGGGPG GVDDGDPLAF LGSGTGDDAA AAFEASLLDA ALAFSREVIG 120 GGDSAGAVSN GATVFSGNYS GTTSGNMSSG ESNNYSGGGS LDAEVVSPTS IMSPAAATAP 180 PPPPFLAHQQ QALHHPKRKV TATAVTTSEP PPVPFPRPGG ASAKRRAATS ISFGGGRDRR 240 HGVHYHQADP TSGAGGGYEP DMEAMAQVKE MIYRAAAMRP VNLGPEVVAD AASGDHQRPR 300 RKNVRISSDP QTVAARLRRE RVSERLRVLQ RLVPGGSKMD TASMLDEAAS YLKFLKSQVQ 360 ALETLGGSNS SNGGANGGSG SSGRSPHHHQ HYNSSTSFLG FARSSRVSPA AGYVNPNYGS 420 NNNASSKLL*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MDATFGWAGA AGCQHVNDDD YFSSRQVVGC ARFETDDAFL GACFGIQQQC DDDVIGGGAG  60
TTTCHVSSNF SGSAAGGGPG GVDDGDPLAF LGSGTGDDAA AAFEASLLDA ALAFSREVIG  120
GGDSAGAVSN GATVFSGNYS GTTSGNMSSG ESNNYSGGGS LDAEVVSPTS IMSPAAATAP  180
PPPPFLAHQQ QALHHPKRKV TATAVTTSEP PPVPFPRPGG ASAKRRAATS ISFGGGRDRR  240
HGVHYHQADP TSGAGGGYEP DMEAMAQVKE MIYRAAAMRP VNLGPEVVAD AASGDHQRPR  300
RKNVRISSDP QTVAARLRRE RVSERLRVLQ RLVPGGSKMD TASMLDEAAS YLKFLKSQVQ  360
ALETLGGSNS SNGGANGGSG SSGRSPHHHQ HYNSSTSFLG FARSSRVSPA AGYVNPNYGS  420
NNNASSKLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	301	RPRRK
2	315	320	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_25743A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818336.1	1e-139	transcription factor LATE FLOWERING-like
Swissprot	A0A0P0WQ90	3e-46	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A2S3HSX9	1e-137	A0A2S3HSX9_9POAL; Uncharacterized protein
STRING	Pavir.Eb02901.1.p	1e-135	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-31	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_25743A

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]