PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_25907A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 213aa MW: 23099.2 Da PI: 8.4052

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_25907A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.4	1.4e-44	16	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +Ca+Ck+lrr+C+++Cv+apyfp e+p++fa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq Oropetium_20150105_25907A 16 PCASCKLLRRRCTQECVFAPYFPPEDPHRFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARLRDPVYGCVGAISYLQ 99 7********************************************************************************* PP DUF260 85 qqleqlkaelallkee 100 qq++ql+ +lal+k+e Oropetium_20150105_25907A 100 QQVSQLQMQLALAKAE 115 **********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.37	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-44	16	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MAGSGSSGNS PSSVPPCASC KLLRRRCTQE CVFAPYFPPE DPHRFAIVHK VFGASNVSKM 60 LQELPVHQRA DAVSSLVYEA NARLRDPVYG CVGAISYLQQ QVSQLQMQLA LAKAEIRCVQ 120 MQQHDDGGQN NYGHYSTAAA PSSKQQQVQQ HMDGETICHS LITMQKKNGL TNALINSPSA 180 HHQQQLLSSL GSSGSTAMML REACLKKESL WA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-48	6	116	1	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-48	6	116	1	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_25907A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100852	9e-98	FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661028.1	2e-86	LOB domain-containing protein 12
Swissprot	Q8LBW3	7e-68	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A368S2P5	4e-85	A0A368S2P5_SETIT; Uncharacterized protein
STRING	Si026864m	1e-84	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-57	LBD family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_25907A

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]