PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25911A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 245aa    MW: 27286.3 Da    PI: 8.444
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25911AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.22.7e-113672255
                    G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                               prlrWtpeLH +F++a                 lm+vkgL++ hvkSHLQ+YR+
  Oropetium_20150105_25911A 36 PRLRWTPELHLCFLRA-----------------LMNVKGLSIGHVKSHLQMYRS 72
                               89***********877.................5*******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-53251IPR009057Homeodomain-like
SuperFamilySSF466891.47E-73373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-95273IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEESSKGTVD IAGGDSSRIR KTSSSSVRPY VRSKNPRLRW TPELHLCFLR ALMNVKGLSI  60
GHVKSHLQMY RSKKIDDSGQ VIAGLWRNQL QEGGQAYNLR HLSLHHAQTD SGTILHRHGI  120
GSKPYYYYYY STVDAGPLLR ARTPYAARAT TASSIPTTTF PQEYSSSQND QITNDHRRRI  180
FKKEDGNDDP LDLELALNIG PPRRENEEEE IRFCSCGKQG DDNGGDQEVE STATGALSLS  240
LFPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25911A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0379573e-33BT037957.1 Zea mays full-length cDNA clone ZM_BFb0204N03 mRNA, complete cds.
GenBankBT0684403e-33BT068440.1 Zea mays full-length cDNA clone ZM_BFb0191O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321607.13e-67uncharacterized protein LOC8064764
TrEMBLA0A1E5VA202e-69A0A1E5VA20_9POAL; Uncharacterized protein
STRINGSb05g000480.18e-69(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-24G2-like family protein