PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_25981A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 189aa MW: 21135.4 Da PI: 9.6185

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_25981A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	64.9	1.5e-20	39	80	1	42
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLt 42 kprlrWt +LH+rFv+av+qLGG++kAtPk+i+++m+ L Oropetium_20150105_25981A 39 KPRLRWTADLHDRFVDAVAQLGGPDKATPKAIMRTMGKYRLG 80 79**********************************987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-18	36	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-14	39	80	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.48E-7	39	75	IPR009057	Homeodomain-like
Pfam	PF14379	3.7E-21	120	165	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MFPGRGLLPL PDAVEPRGRG LGLHGRGGEP SVLLTADPKP RLRWTADLHD RFVDAVAQLG 60 GPDKATPKAI MRTMGKYRLG RQSGKELTEQ SNDASYLMEA QSVTNLSSKV PDQDVKDCQE 120 VKEALRKQME VQRRLHEQVE VQKHIQIRME ANQKYMDTIL NQAYKIRILY KSSGCLTTCS 180 CYKILALV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_25981A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821023.1	8e-77	protein PHR1-LIKE 2-like
Swissprot	Q94A57	3e-49	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2T8IGC6	2e-75	A0A2T8IGC6_9POAL; Uncharacterized protein
STRING	Pavir.Fb00789.1.p	1e-74	(Panicum virgatum)
STRING	GRMZM2G113742_P01	2e-75	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-51	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_25981A

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]