PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_25988A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 194aa MW: 21618.8 Da PI: 7.7089

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_25988A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.6	3.7e-30	45	95	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 ++rlrWt+eLHerFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQ Oropetium_20150105_25988A 45 RQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMSVPGLTIYHVKSHLQ 95 58************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.265	42	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-28	44	95	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.25E-15	44	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.0E-23	46	95	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-6	47	95	IPR001005	SANT/Myb domain
Pfam	PF14379	4.0E-10	132	154	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MYQPNPISNI GTSQSNPSAH EQMEIGASAL APHNGGNNNT NMAARQRLRW TNELHERFVE 60 AVTQLGGPDR ATPKGVLRIM SVPGLTIYHV KSHLQCNSFL WFTQLTSTYV DNKEEKKDAG 120 DLLATLEGSS GMQISEALKL QMEVQKRLHE QLEVXXXXXX XXXXXXXXXX XXXXXXXGMH 180 VFCLRGNSLV TKI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	45	95	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	45	95	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-21	45	95	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	45	95	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	45	95	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	45	95	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	45	95	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	45	95	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	45	95	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	45	95	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	45	95	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	45	95	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_25988A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973261.1	2e-77	myb family transcription factor PHL7
Swissprot	Q9SJW0	2e-50	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	K3YIT3	4e-76	K3YIT3_SETIT; Uncharacterized protein
STRING	Si014152m	7e-77	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	8e-53	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_25988A