PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25997A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 125aa    MW: 14081.8 Da    PI: 8.2073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25997AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00135775523
                               TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  5 dCgksFsrksnLkrHirtH 23
                               +Cgk+F + s L +H  +H
  Oropetium_20150105_25997A 57 NCGKTFVDGSALGKHVHMH 75
                               7**************9988 PP
2zf-C2H211.20.00118099118
                               EEET..TTTEEESSHHHHHH CS
                    zf-C2H2  1 ykCp..dCgksFsrksnLkr 18
                               y C+  +Cgk F ++s+++r
  Oropetium_20150105_25997A 80 YICQeaNCGKKFVDSSYYNR 99
                               89**************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-74676IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-65391No hitNo description
PROSITE profilePS501578.5385380IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-57795IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MTAADASLMD TLLQSLEEYR ERTGTNVPRR TIECSRQRHP GLPEPTSEIL FLYSYKNCGK  60
TFVDGSALGK HVHMHGERQY ICQEANCGKK FVDSSYYNRI SFVVNQGRSV RSCMSQLSVT  120
TSDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25997A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960546.15e-22zinc finger transcription factor YY1
TrEMBLK3Z7431e-20K3Z743_SETIT; Uncharacterized protein
STRINGSi022363m2e-21(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5600722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.31e-19C2H2 family protein