PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_26012A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 181aa MW: 19174.8 Da PI: 11.8051

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_26012A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.8	1e-12	68	118	3	53
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 e++r rrk++NRe+ArrsR+RK+ +eeL+ +++ L a N++L+ +l l+ Oropetium_20150105_26012A 68 EVRRLRRKISNRESARRSRARKQRHLEELRARAARLRAGNRELAGRLRGLQ 118 689****************************************99998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.1E-9	60	120	No hit	No description
SMART	SM00338	2.1E-9	66	130	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.243	68	131	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.4E-10	68	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.92E-9	70	119	No hit	No description
PROSITE pattern	PS00036	0	73	88	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MALALLHVSD PDLELEAFLS EIGFGLATDN VPPPPAHQDA VMTTTVAAAA AATPPEDQQD 60 TSSSAADEVR RLRRKISNRE SARRSRARKQ RHLEELRARA ARLRAGNREL AGRLRGLQAR 120 TALVRLSNDR LRAEGAALGR RLAAAQRAIA LRQIYAAATA ASAAGAGAGF ELQTLASLIV 180 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	89	RRSRARKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_26012A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	K3ZCP8	1e-42	K3ZCP8_SETIT; Uncharacterized protein
STRING	Si024325m	2e-43	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15125	19	19

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_26012A